Reaction IDReaction NameExpressionGene Reaction RuleSubsystemLower BoundUpper Bound
ATPMATP maintenance requirementC00001_c + C00002_c --> C00008_c + C00009_c + C00080_cundefined
Bio01Hexadecenoyl-[acyl-carrier protein] synthesis for biomass13 C00005_c + 20 C00080_c + 7 C01209_c + C03939_c --> 7 C00001_c + 13 C00006_c + 7 C00011_c + 7 C00229_c + C16520_cundefined
Bio02Hexadecacyclopropane - [ACP] synthesis for biomassC00019_c + C16520_c --> C00021_c + C00080_c + c17cycACP_cundefined
Bio03Oleoyl-[acyl-carrier protein] synthesis for biomass15 C00005_c + 23 C00080_c + 8 C01209_c + C03939_c --> 8 C00001_c + 15 C00006_c + 8 C00011_c + 8 C00229_c + C01203_cundefined
Bio04Octadecacyclopropane - [ACP] synthesis for biomassC00019_c + C01203_c --> C00021_c + C00080_c + c19cycACP_cundefined
Bio05Acyl-[acyl-carrier protein] synthesis for biomass0.04 C01203_c + 0.03 C04088_c + 0.03 C05761_c + 0.54 C05764_c + 0.19 C16520_c + 0.12 c17cycACP_c + 0.05 c19cycACP_c --> C00173_cundefined
Bio06Long-chain carboxylate synthesis for biomassC00001_c + C00173_c --> C00229_c + C00347_cundefined
Bio07(Glycerophosphate)n synthesis for biomassC00001_c + 12 C00080_c + 12 C00344_c --> 12 C00641_c + C02768_cundefined
Bio08carbohydrate synthesis for biomassC00029_c + 2 C00052_c --> 3 C00015_c + C11477_cundefined
Bio09DNA synthesis for biomass1.35 C00001_c + 1.35 C00002_c + 0.351 C00131_c + 0.149 C00286_c + 0.149 C00458_c + 0.351 C00459_c --> 1.35 C00008_c + 1.35 C00009_c + C00013_c + C00039_c + 1.35 C00080_cundefined
Bio10peptidoglycan synthesis for biomass3 C00001_c + 4 C00002_c + C00025_c + C00041_c + C00043_c + C00680_c + C00993_c + C01050_c --> 4 C00008_c + 4 C00009_c + C00015_c + 2 C00080_c + C00105_c + C00133_c + C00889_cundefined
Bio11phospholipid synthesis for biomass0.245 C00344_c + 0.194 C00350_c + 0.561 C01241_c --> C01356_cundefined
Bio12protein synthesis for biomass3.5 C00001_c + 4.5 C00002_c + 0.0741 C00025_c + 0.0643 C00037_c + 0.0574 C00041_c + 0.0877 C00047_c + 0.0569 C00049_c + 0.0327 C00062_c + 0.0243 C00064_c + 0.0664 C00065_c + 0.0259 C00073_c + 0.0074 C00078_c + 0.0433 C00079_c + 0.0408 C00082_c + 0.0118 C00097_c + 0.0894 C00123_c + 0.0135 C00135_c + 0.0274 C00148_c + 0.0653 C00152_c + 0.0627 C00183_c + 0.0497 C00188_c + 0.0992 C00407_c --> 4.5 C00008_c + 4.5 C00009_c + C00017_c + 4.5 C00080_cundefined
Bio13RNA synthesis for biomass0.4 C00001_c + 0.7825 C00002_c + 0.194 C00044_c + 0.118 C00063_c + 0.303 C00075_c --> 0.4 C00008_c + 0.4 C00009_c + C00013_c + C00046_c + 0.4 C00080_cundefined
Bio14techoic acid synthesis for biomass0.25 C00002_c + 0.25 C00043_c + 0.25 C00047_c + C02768_c --> 0.75 C00001_c + 0.25 C00008_c + 0.25 C00009_c + 0.25 C00015_c + 0.5 C00080_c + C06707_cundefined
Bio15trace metabolite synthesis for biomass0.152 C00003_c + 0.135 C00006_c + 0.137 C00010_c + 0.128 C00016_c + 0.221 C00061_c + 0.227 C00101_c --> Trace_cundefined
BiomassBiomass Synthesis 40 C00001_c + 40 C00002_c + 4.6976 C00017_c + 0.0845 C00039_c + 0.2039 C00046_c + 0.0973 C00889_c + 0.1065 C01356_c + 0.0572 C06707_c + 0.0889 C11477_c + 0.0816 Trace_c --> 5.4174 Biomass_e + 40 C00008_c + 40 C00009_c + 40 C00080_cundefined
Ex001Water exchange C00001_e --> undefined
Ex002Oxygen exchangeC00007_e --> undefined
Ex003Orthophosphate exchangeC00009_e --> undefined
Ex004CO2 exchange C00011_e --> undefined
Ex005Ammonia exchangeC00014_e --> undefined
Ex006L-Glutamate exchangeC00025_e --> undefined
Ex007D-Glucose exchangeC00031_e --> undefined
Ex008Acetate exchange C00033_e --> undefined
Ex009Manganese exchangeC00034_e --> undefined
Ex010Glycine exchangeC00037_e --> undefined
Ex011Zinc cation exchangeC00038_e --> undefined
Ex012Succinate exchange C00042_e --> undefined
Ex013L-Lysine exchangeC00047_e --> undefined
Ex014Formate exchange C00058_e --> undefined
Ex015Sulfate exchangeC00059_e --> undefined
Ex016L-Arginine exchangeC00062_e --> undefined
Ex017L-Glutamine exchangeC00064_e --> undefined
Ex018L-Serine exchangeC00065_e --> undefined
Ex019Copper exchangeC00070_e --> undefined
Ex020Ascorbate exchangeC00072_e --> undefined
Ex021L-Methionine exchangeC00073_e --> undefined
Ex022Calcium cation exchangeC00076_e --> undefined
Ex023L-Tryptophan exchangeC00078_e --> undefined
Ex024H+ exchange C00080_e --> undefined
Ex025Urea exchangeC00086_e --> undefined
Ex026Nitrite exchangeC00088_e --> undefined
Ex027Sucrose exchangeC00089_e --> undefined
Ex028D-Fructose exchangeC00095_e --> undefined
Ex029L-Cysteine exchangeC00097_e --> undefined
Ex030Glycerol exchangeC00116_e --> undefined
Ex031Biotin exchangeC00120_e --> undefined
Ex032D-Ribose exchangeC00121_e --> undefined
Ex033L-Leucine exchangeC00123_e --> undefined
Ex034D-Galactose exchangeC00124_e --> undefined
Ex035Methanol exchange C00132_e --> undefined
Ex036D-Alanine exchangeC00133_e --> undefined
Ex037Putrescine exchangeC00134_e --> undefined
Ex038L-Proline exchangeC00148_e --> undefined
Ex039D-Mannose exchangeC00159_e --> undefined
Ex040Pectin exchangeC00714_e --> undefined
Ex041Cobalt ion exchangeC00175_e --> undefined
Ex042L-Valine exchangeC00183_e --> undefined
Ex043(S)-Lactate exchange C00186_e --> undefined
Ex044Acetone exchange C00207_e --> undefined
Ex045Maltose exchangeC00208_e --> undefined
Ex046Potassium cation exchangeC00238_e --> undefined
Ex047Lactose exchangeC00243_e --> undefined
Ex048Butanoic acid exchange C00246_e --> undefined
Ex049L-Arabinose exchangeC00259_e --> undefined
Ex050Hydrogen exchange C00282_e --> undefined
Ex051Nickel exchangeC00291_e --> undefined
Ex052Magnesium cation exchangeC00305_e --> undefined
Ex053D-Glucosamine exchangeC00329_e --> undefined
Ex054Mannitol exchangeC00392_e --> undefined
Ex055L-Isoleucine exchangeC00407_e --> undefined
Ex056Ethanol exchange C00469_e --> undefined
Ex0574-Aminobenzoate exchangeC00568_e --> undefined
Ex058Cl- exchangeC00698_e --> undefined
Ex059D-Sorbitol exchangeC00794_e --> undefined
Ex060alpha,alpha-Trehalose exchangeC01083_e --> undefined
Ex061Sodium cation exchangeC01330_e --> undefined
Ex062Salicin exchangeC01451_e --> undefined
Ex063Galactitol exchangeC01697_e --> undefined
Ex064Propane-1,3-diol exchange C02457_e --> undefined
Ex0651-Butanol exchange C06142_e --> undefined
Ex066Molybdate exchangeC06232_e --> undefined
Ex067Fe2+ exchangeC14818_e --> undefined
Ex068D-Xylose exchangeC00181_e --> undefined
Ex0696-Deoxy-L-galactose exchangeC01019_e --> undefined
Ex070N-Acetylmuramate exchangeC02713_e --> undefined
Ex071D-Galactosamine exchangeC02262_e --> undefined
Ex072N-Acetyl-D-galactosamine exchangeC01132_e --> undefined
Ex073N-Acetyl-D-glucosamine exchangeC00140_e --> undefined
Ex074Arbutin exchangeC06186_e --> undefined
Ex075L-Sorbose exchangeC00247_e --> undefined
Ex076Cellobiose exchangeC00185_e --> undefined
Ex077Raffinose exchangeC00492_e --> undefined
ExBiomassBiomass exchange 5.4174 Biomass_e --> undefined
R00004Pyrophosphate phosphohydrolaseC00001_c + C00013_c --> 2 C00009_c + 2 C00080_cCBU1667 or CBU4499undefined
R000062-Acetolactate pyruvate-lyase (carboxylating)C00011_c + C00900_c --> 2 C00022_c + C00080_cCBU3289 or CBU3351 or CBU4218 or CBU4279undefined
R00013Glyoxylate carboxy-lyase (dimerizing)2 C00048_c + C00080_c --> C00011_c + C01146_cundefined
R00019Reduced ferredoxin:H+ oxidoreductase2 C00080_c + 2 C00138_c --> 2 C00139_c + C00282_cCBU1977 or CBU4203 or CBU4311 or CBU4601 or CBU5024undefined
R00026beta-D-Glucoside glucohydrolaseC00001_c + C00185_c --> 2 C00221_cCBU1294 or CBU1301 or CBU1744 or CBU3029 or CBU3411 or CBU3857undefined

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